A Tight Bound for Shortest Augmenting Paths on Trees

The shortest augmenting path technique is one of the fundamental ideas used in maximum matching and maximum flow algorithms. Since being introduced by Edmonds and Karp in 1972, it has been widely applied in many different settings. Surprisingly, despite this extensive usage, it is still not well understood even in the simplest case: online bipartite matching problem on trees. In this problem a bipartite tree $T=(W \uplus B, E)$ is being revealed online, i.e., in each round one vertex from $B$ with its incident edges arrives. It was conjectured by Chaudhuri et. al. [K. Chaudhuri, C. Daskalakis, R. D. Kleinberg, and H. Lin. Online bipartite perfect matching with augmentations. In INFOCOM 2009] that the total length of all shortest augmenting paths found is $O(n \log n)$. In this paper, we prove a tight $O(n \log n)$ upper bound for the total length of shortest augmenting paths for trees improving over $O(n \log^2 n)$ bound [B. Bosek, D. Leniowski, P. Sankowski, and A. Zych. Shortest augmenting paths for online matchings on trees. In WAOA 2015].Comment: 22 pages, 10 figure

A Tree Structure For Dynamic Facility Location

We study the metric facility location problem with client insertions and deletions. This setting differs from the classic dynamic facility location problem, where the set of clients remains the same, but the metric space can change over time. We show a deterministic algorithm that maintains a constant factor approximation to the optimal solution in worst-case time O~(2^{O(kappa^2)}) per client insertion or deletion in metric spaces while answering queries about the cost in O(1) time, where kappa denotes the doubling dimension of the metric. For metric spaces with bounded doubling dimension, the update time is polylogarithmic in the parameters of the problem

Dynamic Clustering to Minimize the Sum of Radii

In this paper, we study the problem of opening centers to cluster a set of clients in a metric space so as to minimize the sum of the costs of the centers and of the cluster radii, in a dynamic environment where clients arrive and depart, and the solution must be updated efficiently while remaining competitive with respect to the current optimal solution. We call this dynamic sum-of-radii clustering problem. We present a data structure that maintains a solution whose cost is within a constant factor of the cost of an optimal solution in metric spaces with bounded doubling dimension and whose worst-case update time is logarithmic in the parameters of the problem

Shortest augmenting paths for online matchings on trees

The shortest augmenting path (Sap) algorithm is one of the most classical approaches to the maximum matching and maximum flow problems, e.g., using it Edmonds and Karp (J. ACM 19(2), 248–264 1972) have shown the first strongly polynomial time algorithm for the maximum flow problem. Quite astonishingly, although it has been studied for many years already, this approach is far from being fully understood. This is exemplified by the online bipartite matching problem. In this problem a bipartite graph G = (W ⊎ B, E) is being revealed online, i.e., in each round one vertex from B with its incident edges arrives. After arrival of this vertex we augment the current matching by using shortest augmenting path. It was conjectured by Chaudhuri et al. (INFOCOM’09) that the total length of all augmenting paths found by Sap is O(nlogn). However, no better bound than O(n2) is known even for trees. In this paper we prove an O(nlog2n) upper bound for the total length of augmenting paths for trees

Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface

Constraint-based approaches facilitate the prediction of cellular metabolic capabilities, based, in turn on predictions of the repertoire of enzymes encoded in the genome. Recently, genome annotations have been used to reconstruct genome scale metabolic reaction networks for numerous species, including Homo sapiens, which allow simulations that provide valuable insights into topics, including predictions of gene essentiality of pathogens, interpretation of genetic polymorphism in metabolic disease syndromes and suggestions for novel approaches to microbial metabolic engineering. These constraint-based simulations are being integrated with the functional genomics portals, an activity that requires efficient implementation of the constraint-based simulations in the web-based environment